qpcr.defaults

Stores basic default settings

qpcr.defaults.defaults.calibrator_prefix = 'calibrator'

the default prefix for calibrator replicates that must be specified within the group names.

qpcr.defaults.defaults.ct_header = 'Ct'

Default assumed column name for replicate Ct entries

qpcr.defaults.defaults.dataset_header = 'assay'

Default assumed column name for dataset/assay entries in BigTables

qpcr.defaults.defaults.default_palette = 'mako_r'

The default palette for (static) plotting

qpcr.defaults.defaults.default_preview = 'AssayBars'

The default setting for Results visualisation. This may be any of the four Results plotters.

qpcr.defaults.defaults.default_style = 'white'

The default style for (static) plotting

qpcr.defaults.defaults.group_name = 'group{}'

Default name to use when group names cannot be inferred

qpcr.defaults.defaults.id_header = 'Name'

Default assumed column name for replicate id entries

qpcr.defaults.defaults.init_log_format = '%(levelname)s  |  %(module)s.%(funcName)s  |  %(message)s'

The default initial logging format that is used if aux.log() has not been called yet

qpcr.defaults.defaults.init_log_loc = 'stdout'

The default logging location.

qpcr.defaults.defaults.log_format = '%(asctime)s  |  %(levelname)s  |  %(module)s.%(funcName)s (%(lineno)d)  |  %(message)s'

The default logging format

qpcr.defaults.defaults.log_level = 30

The default logging level

qpcr.defaults.defaults.plotmode = 'static'

The default setting for interactive or static figures

qpcr.defaults.defaults.raw_col_names = ['id', 'Ct']

default column names for raw Ct data files (don’t change this!)

qpcr.defaults.defaults.seed = 11299114

default seed for randomised processes

qpcr.defaults.defaults.setup_cols = ['id', 'group', 'group_name']

Default Assay dataset columns that supply metadata, and not specific values like Ct values.

qpcr.defaults.defaults.strict_id = False

Set to True if object ids may strictly only be set once!