qpcr.defaults
Stores basic default settings
- qpcr.defaults.defaults.calibrator_prefix = 'calibrator'
the default prefix for calibrator replicates that must be specified within the group names.
- qpcr.defaults.defaults.ct_header = 'Ct'
Default assumed column name for replicate Ct entries
- qpcr.defaults.defaults.dataset_header = 'assay'
Default assumed column name for dataset/assay entries in BigTables
- qpcr.defaults.defaults.default_palette = 'mako_r'
The default palette for (static) plotting
- qpcr.defaults.defaults.default_preview = 'AssayBars'
The default setting for Results visualisation. This may be any of the four Results plotters.
- qpcr.defaults.defaults.default_style = 'white'
The default style for (static) plotting
- qpcr.defaults.defaults.group_name = 'group{}'
Default name to use when group names cannot be inferred
- qpcr.defaults.defaults.id_header = 'Name'
Default assumed column name for replicate id entries
- qpcr.defaults.defaults.init_log_format = '%(levelname)s | %(module)s.%(funcName)s | %(message)s'
The default initial logging format that is used if aux.log() has not been called yet
- qpcr.defaults.defaults.init_log_loc = 'stdout'
The default logging location.
- qpcr.defaults.defaults.log_format = '%(asctime)s | %(levelname)s | %(module)s.%(funcName)s (%(lineno)d) | %(message)s'
The default logging format
- qpcr.defaults.defaults.log_level = 30
The default logging level
- qpcr.defaults.defaults.plotmode = 'static'
The default setting for interactive or static figures
- qpcr.defaults.defaults.raw_col_names = ['id', 'Ct']
default column names for raw Ct data files (don’t change this!)
- qpcr.defaults.defaults.seed = 11299114
default seed for randomised processes
- qpcr.defaults.defaults.setup_cols = ['id', 'group', 'group_name']
Default Assay dataset columns that supply metadata, and not specific values like Ct values.
- qpcr.defaults.defaults.strict_id = False
Set to True if object ids may strictly only be set once!